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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 7,409
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002287
Taxonomy269482 - Burkholderia vietnamiensis (strain G4 / LMG 22486)
StrainG4 / LMG 22486
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000016205.1 from ENA/EMBL full
CompletenessOutlier

The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility. B. vietnamiensis is known for its rhizosphere colonizing ability on rice, and its ability to fix N2 (PubMed 11375196). It is also the third most frequent Bcc species isolated from CF patients. B. vietnamiensis strain G4 (formerly B.cepacia strain R1808) is the best trichloroethene (TCE) co-oxidizing strain yet discovered, having been isolated from an industrial waste treatment facility at Pensacola Naval Air Station, Florida, U.S.A. TCE and its sister chloroethenes are the most widespread hazardous environmental contaminants in groundwaters. It has been used at a number of polluted sites to aid clean-up of ground water. Besides its pollutant degrading ability, this strain was sequenced because well-characterized members of this species come from the CF lung, rice rhizosphere and soil, and hence offer the prospect for differentiating traits important to each habitat (adapted from genome.jgi-psf.org/bur08/bur08.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13246
Chromosome 22075
Chromosome 31099
Plasmid pBVIE01391
Plasmid pBVIE02257
Plasmid pBVIE03247
Plasmid pBVIE04106
Plasmid pBVIE05111

Publications

  1. "Complete sequence of chromosome 1 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of plasmid pBVIE01 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of chromosome 3 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
  4. "Complete sequence of plasmid pBVIE03 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
  5. "Complete sequence of plasmid pBVIE04 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
  6. "Complete sequence of chromosome 2 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
  7. "Complete sequence of plasmid pBVIE02 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
  8. "Complete sequence of plasmid pBVIE05 of Burkholderia vietnamiensis G4."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    Richardson P.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
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