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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 44,484
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002281
Taxonomy9796 - Equus caballus
StrainThoroughbred
Last modifiedJanuary 29, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_002863925.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:98.2%[S:50.2%,D:48%],F:0.4%,M:1.4%,n:12234 laurasiatheria_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (high)

The horse is a hoofed, herbivorous mammal belonging to the family Equidae. Domesticated around 6,000 years ago, this animal played an important role in human exploration of novel territories. Nowadays there are more than 300 breeds, developed for various needs in transportation and agriculture. As well as their role in sport and entertainment, horses take part in police work and therapy. The horse is used in biomedical research as a model organism. Horses are known to share with humans more than 90 hereditary diseases, which makes the task of mapping the horse genome significant for veterinary science and medicine.

The horse genome has 32 chromosomes containing 2.7 Gb with 20,000 protein-coding genes. The reference proteome is derived from the genome sequence published in 2009

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13433
Chromosome 22332
Chromosome 31922
Chromosome 41629
Chromosome 52230
Chromosome 62083
Chromosome 72595
Chromosome 81775
Chromosome 9948
Chromosome 102185
Chromosome 112245
Chromosome 121271
Chromosome 131383
Chromosome 141445
Chromosome 151498
Chromosome 161607
Chromosome 17712
Chromosome 18983
Chromosome 19913
Chromosome 201353
Chromosome 21791
Chromosome 221113
Chromosome 23701
Chromosome 24951
Chromosome 251113
Chromosome 26477
Chromosome 27511
Chromosome 28879
Chromosome 29457
Chromosome 30419
Chromosome 31329
Chromosome X1649
Mitochondrion13
Unplaced
553
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Main funding by: National Institutes of Health

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