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Overview

StatusReference proteome
Proteinsi3,816
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002257
Taxonomy395965 - Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2)
StrainDSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2
Last modifiedOctober 26, 2018
Genome assembly and annotationi GCA_000021745.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2) pan proteome (fasta)

Methylocella silvestris is an acidophilic, Gram-negative, non-pigmented, non-motile, rod-shaped, aerobic methane-oxidizing bacteria isolated from an acidic forest cambisol (soil characterized by an absence of a layer of accumulated clay, humus, soluble salts, or iron and aluminum oxides) near Marburg, Germany. Unlike other methanotrophs, Methylocella is a catabolically flexible "facultative methanotroph", able to grow on some multicarbon substrates such as acetate, ethanol, pyruvate, succinate, malate and propane. It is able to fix atmospheric nitrogen via an oxygen-sensitive nitrogenase. The cells possess a highly specific bipolar appearance. They lack the intracytoplasmic membranes common to all methane-oxidizing bacteria except Methylocella, but contain a vesicular membrane system connected to the cytoplasmic membrane. A soluble methane monooxygenase was present, but no particulate methane monooxygenase could be detected. These bacteria utilize the serine pathway for carbon assimilation. It is capable of growth at pH values between 4.5 and 7 (with an optimum at pH 5.5) and at temperatures between 4 and 30 degrees C. Compared with Methylocella palustris KT, these strains have greater tolerance of cold temperatures, dissolved salts and methanol. This is the type strain (adapted from genome.jgi-psf.org/metsi/metsi.home.html and PubMed 13130000).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3816

Publications

  1. "Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2."
    Chen Y., Crombie A., Rahman M.T., Dedysh S.N., Liesack W., Stott M.B., Alam M., Theisen A.R., Murrell J.C., Dunfield P.F.
    J. Bacteriol. 2010:3840-3841(2010) [PubMed] [Europe PMC] [Abstract]
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