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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 4,053
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002233
Taxonomy655816 - Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23)
StrainATCC 23059 / NRRL B-14472 / W23
Last modifiedOctober 26, 2018
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000146565.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Bacillus subtilis (strain 168) pan proteome (fasta)

Gram-positive harmless bacterium found in soil. Its cell envelope consists of a thick peptidoglycan wall and and cell membrane. It is capable of producing endospores resistant to adverse environmental conditions such as heat and desiccation and is widely used for the production of enzymes and specialty chemicals.

Strain W23 is a "legacy" strain which has been cited in the scientific literature since the early 1960s. Its origin is unknown, but it belongs to a different subspecies than the common B.subtilis workhorse strain 168, is prototrophic and streptomycin-resistant. Many modern laboratory strains are hybrids with W23 islands in a 168 genomic background (adapted from PMID 18723616).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome4053

Publications

  1. "The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics."
    Zeigler D.R.
    Microbiology 2011:2033-2041(2011) [PubMed] [Europe PMC] [Abstract]
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