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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 5,660
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002187
Taxonomy626418 - Burkholderia glumae (strain BGR1)
StrainBGR1
Last modifiedMay 4, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000022645.2 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Burkholderia glumae (strain BGR1) pan proteome (fasta)
BuscoC:100%[S:99.6%,D:0.4%],F:0%,M:0%,n:688
CompletenessStandard

Burkholderia glumae causes grain and seedling rot in rice and bacterial wilt in many field crops; bacterial rice grain rot is becoming prevalent in many rice-growing countries, including China, Japan, Vietnam, the Philippines, India and the USA. The bacterium infects rice panicles at the flowering stage and causes serious yield losses when temperature and humidity are favorable for successful infection and in vivo proliferation. The bacterium produces yellow pigments, toxoflavin, reumycin, and fervenulin. Among these, toxoflavin is the most critical virulence factor of the bacterium. Strain BGR1 was isolated in Korea (adapted from PMID 19329631).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13274
Chromosome 22061
Plasmid bglu_1p94
Plasmid bglu_2p97
Plasmid bglu_3p105
Plasmid bglu_4p102

Publications

  1. "Complete genome sequence of Burkholderia glumae BGR1."
    Lim J., Lee T.-H., Nahm B.H., Choi Y.D., Kim M., Hwang I.
    J. Bacteriol. 191:3758-3759(2009) [PubMed] [Europe PMC] [Abstract]
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