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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 9,320
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002139
Taxonomy448385 - Sorangium cellulosum (strain So ce56)
StrainSo ce56
Last modifiedJanuary 29, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000067165.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:96.5%[S:94.2%,D:2.3%],F:0.4%,M:3.1%,n:259 deltaproteobacteria_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (high)

Sorangium cellulosum (strain So ce56) is an obligate anaerobic, Gram-negative bacterium. Its genome, with 13033779 base pairs, is the largest bacterial genome sequenced (as of January 2008) and contains over 9200 predicted protein coding genes. About 35 % of the CDS have no significant similarity to predicted proteins in the databases. The noncoding regions represent 14 % of the genome.

It possesses 317 ELKs (eukaryotic protein kinase-like kinases) all of which contain the 11 subdomains known to be critical for activity. Sorangium cellulosum (strain So ce56) produces the metabolite etnangien, an inhibitor of bacterial and viral nucleic acid polymerases. It has numerous enzymes with biotechnological potential, including lipolytic activities, proteases, cellulases, nitrilases, amidases and hydantoinases. It appears to encode a rich supply of S8 family peptidases, subtilisin-like enzymes that are widely exploited as additives in laundry detergents.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome9320
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Main funding by: National Institutes of Health

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