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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 6,092
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002040
Taxonomy137722 - Azospirillum sp. (strain B510)
StrainB510
Last modifiedJuly 20, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000010725.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Azospirillum lipoferum (strain 4B) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:100%[S:98.5%,D:1.5%],F:0%,M:0%,n:617 rhodospirillales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Azospirillum sp. B510 is a rice endophyte isolated in August 1999 from the surface-sterilized stems of rice plants (Oryza sativa cv. Nipponbare) cultivated in an experimental paddy field in Japan. In addition to being a diazotroph under free-living conditions, B510 was found to have positive motility, and to be capable of degrading plant cell walls. B510 is capable of colonizing internal rice tissues, and inoculation with B510 was shown to promote plant growth under both laboratory and field conditions. It is capable of fixing N(2) in planta. B510 inoculation increases stem number resulting in an increase in seed yield. The genome consists of 1 chromosome and 6 plasmids, 2 of which encode essential genes. There are 280 insertions sequences and at least 2 putative prophages in the genome. Three putative plant hormone-related genes encoding tryptophan 2-monooxytenase (iaaM) and indole-3-acetaldehyde hydrolase (iaaH), which are involved in indole-3-actic acid biosynthesis, and 1-aminocyclopropane-1-carboxylate deaminase (acdS), which reduces ethylene levels, were identified. Moreover, B510 inoculation enhanced disease resistance to virulent rice blast fungus and the bacterial pathogen Xanthomonas oryzae.15 Thus, Azospirillum sp. B510 is likely a beneficial bacterium with agronomic applications (adapted from PMID 20047946).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2806
Plasmid pAB510a1119
Plasmid pAB510b603
Plasmid pAB510c526
Plasmid pAB510d518
Plasmid pAB510e414
Plasmid pAB510f185
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Main funding by: National Institutes of Health

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