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Proteomes - Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 8,955
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002029
Taxonomy479432 - Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)
StrainATCC 12428 / DSM 43021 / JCM 3005 / NI 9100
Last modifiedAugust 19, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000024865.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.7%[S:98.6%,D:1%],F:0%,M:0.3%,n:1162 streptosporangiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) is an aerobic Gram-positive bacterium isolated from vegetable garden soil in 1955. It produces aerial mycelium and the color of the substrate mycelium is red-brown to yellow-brown. S. roseum utilizes glucose, arabinose, sucrose, xylose, fructose, and raffinose, but not inositol, mannose, rhamnose, or cellulose. It produces a secondary metabolite, the antibiotic angucycline WS 79089B, which is an inhibitor of the endothelin-converting enzyme. In contrast to S. carneum, S. roseum does not produce an antibiotic against Staphylococcus aureus. (Adaptated from: standardsingenomics.org/index.php/sigen/article/view/sigs.631049/139).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Plasmid pSROS01
CP001815
30
Chromosome
CP001814
8926
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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