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Overview

StatusReference proteome
Proteinsi4,493
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002015
Taxonomy425104 - Shewanella sediminis (strain HAW-EB3)
StrainHAW-EB3
Last modifiedNovember 9, 2018
Genome assembly and annotationi GCA_000018025.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Shewanella sediminis (strain HAW-EB3) pan proteome (fasta)

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.

Shewanella sediminis HAW-EB3 was isolated from sediment taken at a depth of 215 meters from an unexploded-ordinance-dumping site 50 nautical miles from Halifax Harbor, in the Atlantic Ocean. This organism is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) anaerobically at 10 degrees Celsius . RDX is a member of a family of nitramine compounds which are used in the production of explosives. These chemicals are toxic and can be a major source of contamination of marine and freshwater sediments. Shewanella sediminis HAW-EB3 (NCIMB 14036, DSM 17055) is the type strain and the genome sequence will provide information on the production and regulation of proteins involved in the degradation of RDX.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome4493

Publications

  1. "Complete sequence of Shewanella sediminis HAW-EB3."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    Richardson P.
    Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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