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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 3,421
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000002007
Taxonomy288705 - Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
StrainATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235
Last modifiedSeptember 29, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000018885.1 from ENA/EMBL

Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) is a Gram-positive, rod-shaped bacterium that causes the bacterial kidney disease (BKD) in salmonids. BKD is the most difficult bacterial disease of farmed fish to control, in part because of its dual mode of transmission. R. salmoninarum is transmitted vertically from parent fish to progeny in association with the eggs, as well as horizontally from fish to fish. Additionally treatment is not really effective as the bacterium hides insides the fish cells, such as the white blood cells, which drugs and the immune system penetrate poorly. It is for this same reason that an effective vaccine has not been developed. The only solution to the problem is disinfection of roe, disposal of infected fish and disinfection of the whole fish farming environment. The disease develops gradually with slowly growing mortality. The disease is chronic in nature, and mortality occurs most often in 6- to 12-month-old juvenile salmonids and prespawning adults. It has been detected in fish in freshwater as well as saline waters, in all age groups in wild stocks and in fish culture facilities. Different species of salmonids have different level of susceptibility. It is the greatest cause of infectious disease related mortality in restoration and conservation programs for several endangered species (adapted from PMID18723615).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3421

Publications

  1. "Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor."
    Wiens G.D., Rockey D.D., Wu Z., Chang J., Levy R., Crane S., Chen D.S., Capri G.R., Burnett J.R., Sudheesh P.S., Schipma M.J., Burd H., Bhattacharyya A., Rhodes L.D., Kaul R., Strom M.S.
    J. Bacteriol. 2008:6970-6982(2008) [PubMed] [Europe PMC] [Abstract]
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