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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 2,016
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001902
Taxonomy591001 - Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4)
StrainATCC 25085 / DSM 20731 / VR4
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000025305.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) pan proteome (fasta)
BuscoC:96.8%[S:95.4%,D:1.4%],F:0.5%,M:2.8%,n:218
CompletenessStandard

Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4, the type strain) is an anaerobic Gram-negative bacterium isolated from a pig gut. It can utilize amino acids as the sole source of energy for growth, but lactate, fumarate, malate, succinate, citrate, and pyruvate can not serve as energy sources for growth. Acetic and butyric acids and CO2 are produced. Growth is good at 30 to 37 degrees Celsius and poor or negative at 25 and 45 degrees Celsius. The cells do not survive heating at 60 degrees Celsius for 30 min. (Adapted from PMID: 5784223).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2016
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