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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,861
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001873
Taxonomy552526 - Streptococcus equi subsp. zooepidemicus (strain MGCS10565)
StrainMGCS10565
Last modifiedJuly 24, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000020765.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Streptococcus pyogenes serotype M1 pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:98.3%[S:98%,D:0.2%],F:0.7%,M:1%,n:402 lactobacillales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (low value)

Streptococci are non-motile, Gram-positive cocci with widely varying pathogenic potential that occur in pairs or chains. Streptococcus equi subspecies zooepidemicus, a Lancefield group C Streptococcus (GCS), is primarily an opportunistic pathogen of a wide variety of non-human animal species, including domesticated species such as horses, cows, pigs, sheep, and dogs, and is a pathogen of veterinary concern. It is a well-known cause of mastitis in cows and mares, and is the most frequently isolated opportunistic pathogen of horses. S.equi zooepidemicus rarely causes human invasive infections, which usually originate either from zoonotic transmission from domesticated animals to humans or by ingestion of improperly pasteurized milk or milk products. S.equi subsp. zooepidemicus (strain MGCS10565) was responsible for a virulent outbreak of poststreptococcal glomerulonephritis (PSGN) in Brazil from December 1997 to July 1998 following consumption of cheese made with unpasteurized milk. PSGN, a common cause of preventable kidney disease, is thought to result when antibody-antigen immune complexes become lodged in the kidney glomerulus, triggering proinflammatory immunologic processes, and producing organ injury. Unusually this organism has no prophages (adapted from PubMed 18716664).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1861

Publications

  1. "Genome sequence of a lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease."
    Beres S.B., Sesso R., Pinto S.W.L., Hoe N.P., Porcella S.F., Deleo F.R., Musser J.M.
    PLoS ONE 3:E3026-E3026(2008) [PubMed] [Europe PMC] [Abstract]
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