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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 4,026
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001867
Taxonomy391008 - Stenotrophomonas maltophilia (strain R551-3)
StrainR551-3
Last modifiedJuly 25, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000020665.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Stenotrophomonas sp. SKA14 pan proteome (fasta)

The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.

Stenotrophomonas maltophilia (strain R551-3) is aerobic endophitic bacterium isolated from Populus trichocarpa x deltoides cv. "Hoogvorst". It represents the second most commonly found endophytic species in poplar. Identical bacteria were isolated from the poplar rhizosphere, root and stem. S. maltophilia 551-3 is closely related to S. maltophilia K279a (based on 16S rDNA sequence). A comparison between the two genome sequences should allow identifying gene functions that are a prerequisite for the endophytic behavior of S. maltophilia R551-3 and its successful colonization of poplar. S. maltophilia represents a bacterial species of potential agronomic importance. Traits of S. maltophilia associated with biocontrol mechanisms include antibiotic production, extracellular enzyme activities such as protease and chitinase, and rhizosphere colonization potential (adapted from genome.jgi-psf.org/stema/stema.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome4026

Publications

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