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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 8,591
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001817
Taxonomy266265 - Paraburkholderia xenovorans (strain LB400)
StrainLB400
Last modifiedFebruary 26, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000013645.1 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.9%[S:98.5%,D:1.3%],F:0.1%,M:0%,n:688 burkholderiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (high value)

Burkholderia xenovorans (strain LB400), has one of the largest known prokaryotic genomes (9.7 Mb) and is one of the best aerobic PCB degrading strains. It was isolated from a PCB-containing landfill near in upper New York State by a research team at General Electric Research. It oxidizes more than 20 PCB congeners including some with 4, 5 and 6 chlorine substitutions on the biphenyl rings. Three pathways for degradation of benzoate intermediates from biphenyl oxidation have been found in this organism. It also fixes nitrogen. This strain is known by many names. Originally it was described as Pseudomonas cepacia and later, in succession, Burkholderia cepacia, Burkholderia spp., Burkholderia fungorum.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 14354
Chromosome 22954
Chromosome 31306
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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