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StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 41,459
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001811
Taxonomy9986 - Oryctolagus cuniculus
StrainThorbecke inbred
Last modifiedFebruary 26, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000003625.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:85%[S:45.4%,D:39.6%],F:2.2%,M:12.8%,n:13798 glires_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

The European rabbit is a species belonging to the Leporidae family and is represented by wild as well as domesticated animals. Although it has been hunted by humans for a long time, rabbits were domesticated only in the 5th century by French monks. Nowadays rabbits are kept as pets or food animals across the world. The rabbit is commonly used as a model organism in a wide range of disciplines, including embryology, ophthalmology, neurology, immunology, and especially in toxicology for testing consumer products.

The rabbit genome has 21 pairs of autosomes and two sex chromosomes containing 3.5 Gb with 27,000 protein-coding genes. The reference proteome is derived from the genome sequence submitted in 2009 to the EMBL/GenBank/DDBJ databases.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13047
Chromosome 22109
Chromosome 31787
Chromosome 41668
Chromosome 5646
Chromosome 6549
Chromosome 71912
Chromosome 81095
Chromosome 91589
Chromosome 10600
Chromosome 11711
Chromosome 122077
Chromosome 132732
Chromosome 141721
Chromosome 151072
Chromosome 161084
Chromosome 171403
Chromosome 181171
Chromosome 191613
Chromosome 20462
Chromosome 21354
Chromosome X1218
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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