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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 41,462
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001811
Taxonomy9986 - Oryctolagus cuniculus
StrainThorbecke inbred
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000003625.1 from Ensembl full
BuscoC:3.9%[S:3.8%,D:0%],F:0%,M:96.1%,n:13798
CompletenessOutlier

The European rabbit is a species belonging to the Leporidae family and is represented by wild as well as domesticated animals. Although it has been hunted by humans for a long time, rabbits were domesticated only in the 5th century by French monks. Nowadays rabbits are kept as pets or food animals across the world. The rabbit is commonly used as a model organism in a wide range of disciplines, including embryology, ophthalmology, neurology, immunology, and especially in toxicology for testing consumer products.

The rabbit genome has 21 pairs of autosomes and two sex chromosomes containing 3.5 Gb with 27,000 protein-coding genes. The reference proteome is derived from the genome sequence submitted in 2009 to the EMBL/GenBank/DDBJ databases.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13043
Chromosome 22107
Chromosome 31784
Chromosome 41667
Chromosome 5646
Chromosome 6549
Chromosome 71910
Chromosome 81095
Chromosome 91586
Chromosome 10598
Chromosome 11708
Chromosome 122075
Chromosome 132730
Chromosome 141720
Chromosome 151070
Chromosome 161083
Chromosome 171401
Chromosome 181170
Chromosome 191612
Chromosome 20462
Chromosome 21354
Chromosome X1215
Mitochondrion13
Unplaced
10866
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Main funding by: National Institutes of Health

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