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Proteomes - Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 10,257
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001805
Taxonomy367110 - Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
StrainATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987
Last modifiedAugust 23, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000182925.2 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.2%[S:87.5%,D:11.7%],F:0.2%,M:0.5%,n:3817 sordariomycetes_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Outlier

Neurospora crassa is a multicellular filamentous fungus, which has been an important model species since the 1920s. Work on Neurospora in the 1940s led to the one-gene-one-enzyme hypothesis.

It is particularly useful in the study of epigenetic and genome defense mechanisms, such as the repeat-induced point mutation (RIP) process for suppressing gene duplication, which is unique to fungi.

The Neurospora crassa genome is approximately 40Mb contained in 7 chromosomes. Number of protein coding genes are more than double of Schizosaccharomyces pombe.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 1, Linkage Group I
CM002236
2484
Chromosome 2, Linkage Group V
CM002240
1656
Chromosome 3, Linkage Group III
CM002238
1331
Chromosome 4, Linkage Group IV
CM002239
1555
Chromosome 5, Linkage Group VI
CM002241
1032
Chromosome 6, Linkage Group II
CM002237
1082
Chromosome 7, Linkage Group VII
CM002242
1090
Unassembled WGS sequence
AABX03000000
850
Mitochondrion
KC683708
28
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Main funding by: National Institutes of Health

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