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Proteomes - Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 10,258
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001805
Taxonomy367110 - Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
StrainATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987
Last modifiedJuly 15, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000182925.2 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) pan proteome (fasta)

Neurospora crassa is a multicellular filamentous fungus, which has been an important model species since the 1920s. Work on Neurospora in the 1940s led to the one-gene-one-enzyme hypothesis.

It is particularly useful in the study of epigenetic and genome defense mechanisms, such as the repeat-induced point mutation (RIP) process for suppressing gene duplication, which is unique to fungi.

The Neurospora crassa genome is approximately 40Mb contained in 7 chromosomes. There are around 10,000 predicted protein-coding genes, which is more than double that of Schizosaccharomyces pombe.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 1, Linkage Group I
CM002236
2484
Chromosome 2, Linkage Group V
CM002240
1656
Chromosome 3, Linkage Group III
CM002238
1331
Chromosome 4, Linkage Group IV
CM002239
1555
Chromosome 5, Linkage Group VI
CM002241
1033
Chromosome 6, Linkage Group II
CM002237
1082
Chromosome 7, Linkage Group VII
CM002242
1090
Mitochondrion
KC683708
28
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Main funding by: National Institutes of Health

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