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Overview

StatusReference proteome
Proteinsi2,767
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001741
Taxonomy509170 - Acinetobacter baumannii (strain SDF)
StrainSDF
Last modifiedOctober 12, 2018
Genome assembly and annotationi GCA_000069205.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Acinetobacter baumannii (strain SDF) pan proteome (fasta)

Acinetobacter baumannii is a pathogenic species commonly isolated from the hospital environment and hospitalized patients. It is an aquatic organism, and is often cultured from liquid medical samples such as respiratory secretions, wounds, and urine. Acinetobacter also colonizes irrigating solutions and intravenous solutions. Although it has low virulence, it is capable of causing infection. Most isolates recovered from patients represent colonization rather than infection. When infections do occur, they usually occur in the blood, or in organs with a high fluid content, such as the lungs or urinary tract. Acinetobacter baumannii SDF is responsible for community-acquired infections, and is highly sensitive to antibiotics. This strain was isolated from the interior of body lice collected on homeless people living in France. Given that the louse interior is usually sterile, the presence of this strain can only be due to cryptic bacteremic episodes. Infections by this organism are becoming increasingly problematic due to the high number of resistance genes found in clinical isolates. Some strains are now resistant to all known antibiotics. Most of these genes appear to have been transferred horizontally from other organisms. Many of them cluster into a single genomic island in strain AYE as compared to strain SDF.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2707
Plasmid p1ABSDF8
Plasmid p2ABSDF30
Plasmid p3ABSDF22
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Main funding by: National Institutes of Health

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