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Overview

StatusReference proteome
Proteinsi7,197
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001739
Taxonomy398527 - Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)
StrainDSM 17436 / LMG 22146 / PsJN
Last modifiedJuly 24, 2018
Genome assembly and annotationi GCA_000020125.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans) pan proteome (fasta)

A plant growth-promoting rhizobacteria, Burkholderia phytofirmans was isolated from surface-sterilized onion roots in Nova Scotia, Canada, and has been shown to be beneficial to a number of plants such as potato, tomato and grapevine. In grapevine it has been shown to colonize most of the plant, starting from a root inoculate. This endophyte also confers mild pathogen resistance. It is the type strain for the species (adapted from genome.jgi-psf.org/burpp/burpp.home.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 13911
Chromosome 23142
Plasmid pBPHYT01167

Publications

  1. "Complete genome sequence of the plant growth-promoting endophyte Burkholderia phytofirmans strain PsJN."
    Weilharter A., Mitter B., Shin M.V., Chain P.S., Nowak J., Sessitsch A.
    J. Bacteriol. 2011:3383-3384(2011) [PubMed] [Europe PMC] [Abstract]
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