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Overview

Proteins5,242
Proteome IDiUP000001725
Taxonomy395960 - Rhodopseudomonas palustris (strain TIE-1)
StrainTIE-1
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000020445.1 from ENA/EMBL
Pan proteomei This proteome is part of the Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) pan proteome (fasta)

Rhodopseudomonas palustris are phototrophic, purple non-sulfur bacteria commonly found in soils and water. They fix carbon dioxide and nitrogen, produce hydrogen, and degrade diverse biomass-associated aromatic compounds under anaerobic (phototrophic) and aerobic (heterotrophic) conditions. Against the background of general metabolic versatility of the R. palustris species there is considerable strain-to-strain diversity.

Strain TIE-1, a genetically tractable bacterium, was isolated from an iron-rich mat from School Street Marsh in Woods Hole, USA. It is able to couple the oxidation of ferrous iron [Fe(II)] to reductive CO(2) fixation by using light energy, a form of photosynthesis that may be very old. The final product of Fe(II) oxidation accumulates exclusively outside the cell in the form of Fe(III) precipitates. Under anaerobic conditions, TIE-1 grows photoautotrophically with Fe(II), H2, or thiosulfate as the electron donor and photoheterotrophically with a variety of organic carbon sources; it also grows chemoheterotrophically in the dark. Phototrophically grown cells contain lamellar intracytoplasmic membranes (adapted from PubMed 16085840).

Componentsi

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Component nameGenome Accession(s)
Proteins
Chromosome5242

Publications

  1. "Complete sequence of Rhodopseudomonas palustris TIE-1."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Emerson D., Newman D.K., Roden E., Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases

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