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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,241
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001702
Taxonomy706191 - Pantoea ananatis (strain LMG 20103)
StrainLMG 20103
Last modifiedMay 3, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000025405.2 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Pantoea ananatis (strain LMG 20103) pan proteome (fasta)
BuscoC:99.1%[S:98.9%,D:0.2%],F:0.9%,M:0%,n:440
CompletenessStandard

The genus Pantoea hosts a number of important plant pathogens and clinically relevant species. It has been isolated from a range of plant hosts worldwide, and its ability to cause disease in several important staple food crops, including maize, onion and rice, has led to its being recognized as an important emerging plant pathogen. P.ananatis was initially isolated in 1927 in the Philippines where it causes fruitlet rot on pineapple. In South Africa, P.ananatis causes severe blight and dieback of Eucalyptus hybrid and clone seedlings/cuttings, which affects the pulp and paper industry. P.ananatis can be associated with plants as an epiphyte, endophyte, pathogen or symbiont, but can also occupy diverse and unusual ecological niches where it may function as a saprophyte. P.ananatis has also been reported to cause bacteraemia in humans. Additionally its ice nucleation activity has been exploited by both the food industry and biological control specialists of insects (adapted from PMID 20348253 and 19400836).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome4241

Publications

  1. "Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback."
    De Maayer P., Chan W.Y., Venter S.N., Toth I.K., Birch P.R., Joubert F., Coutinho T.A.
    J. Bacteriol. 192:2936-2937(2010) [PubMed] [Europe PMC] [Abstract]
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