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Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 5,838
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001692
Taxonomy977880 - Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1)
StrainDSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1
Last modifiedMarch 8, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000069785.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (Ralstonia eutropha) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.9%[S:99.3%,D:0.6%],F:0%,M:0.1%,n:688 burkholderiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Cupriavidus taiwanensis LMG19424 (originally called Ralstonia taiwanensis or Wautersia taiwanensis), a betaproteobacteria of the rhizobia group, was isolated from a nodule from the legume species Mimosa pudica in Taiwan. The genome of strain LMG19424 is comprised of three replicons, 2 chromosomes of 3.5 Mb, and 2.4 Mb, and a symbiotic plasmid of 0.5 Mb which carries the genes that are essential for nodulation and nitrogen fixation (not sequenced in this project). C.taiwanensis is motile by means of peritrichous flagella and grows aerobically at 28 to 37 degrees C. It is catalase- and oxidase-positive, reduces nitrate, hydrolyzes aesculin, and is susceptible to colistin. It has only recently been discovered that in addition to alphaproteobacteria some betaproteobacteria are also able to nodulate legumes and fix atmospheric nitrogen. Thus it is only distantly related to most known nodulating/nitrogen fixing bacteria and will be interesting to study for its differences from them (adapted from PubMed 11594603 and

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 13134
Chromosome 22240
Plasmid pRALTA467
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Main funding by: National Institutes of Health

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