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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,179
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001688
Taxonomy32049 - Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
StrainATCC 27264 / PCC 7002 / PR-6
Last modifiedAugust 28, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000019485.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Synechococcus sp. NIES-970 pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:98.4%[S:98.4%,D:0%],F:0.1%,M:1.5%,n:788 synechococcales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Synechococcus sp. PCC 7002 (formerly known as Agmenellum quadruplicatum strain PR-6) was isolated in 1961 from an onshore, marine mud sample derived from fish pens in Puerto Rico. It grows in brackish (euryhaline) and/or marine water. The organism is unicellular or forms short filaments of two to four cells at temperatures near the optimal temperature for growth, 38 degrees Celsius. Cells lack phycoerythrin or phycoerythrocyanin. Synechococcus sp. PCC 7002 is facultatively photoheterotrophic with glycerol as substrate, has an obligate requirement for vitamin B12, and is naturally transformable. It is among the fastest growing of all cyanobacteria and is extremely tolerant of high light intensities. It does not fix nitrogen. It is widely used as a model organism for studies of the photosynthetic apparatus (trimeric PSI in particular is very stable), the regulation of carbon and nitrogen metabolism, and other aspects of cyanobacterial physiology and metabolism (adapted from www.bmb.psu.edu/faculty/bryant/lab/Project/Cyano/index.html).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2821
Plasmid pAQ13
Plasmid pAQ317
Plasmid pAQ430
Plasmid pAQ539
Plasmid pAQ6109
Plasmid pAQ7160

Publications

  1. "Complete sequence of Synechococcus sp. PCC 7002."
    Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T., Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C., Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A.
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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