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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 19,108
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001646
Taxonomy28377 - Anolis carolinensis
StrainJBL SC #1
Last modifiedFebruary 26, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000090745.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:86.5%[S:82.4%,D:4.1%],F:4.1%,M:9.4%,n:7480 sauropsida_odb10

The green anole is a lizard belonging to the Polychrotidae family. This insectivorous and herbivorous animal is native to North America. Many people keep it as a pet because of its ability to change color which is unique for this type of lizard.

The green anole genome has 18 chromosomes containing 1.8 Gb with 18,000 protein-coding genes. The reference proteome is derived from the genome sequence published in 2011.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 12065
Chromosome 22037
Chromosome 31408
Chromosome 41445
Chromosome 51207
Chromosome 6904
Linkage group LGa24
Linkage group LGb65
Linkage group LGc63
Linkage group LGd5
Linkage group LGf108
Linkage group LGg3
Linkage group LGh3
Unplaced
9765
Mitochondrion13

Publications

  1. "Adaptive evolution and functional redesign of core metabolic proteins in snakes."
    Castoe T.A., Jiang Z.J., Gu W., Wang Z.O., Pollock D.D.
    PLoS ONE 3:E2201-E2201(2008) [PubMed] [Europe PMC] [Abstract]
  2. "The Genome Sequence of Anolis carolinensis (Green Anole Lizard)."
    The Genome Sequencing Platform
    Di Palma F., Alfoldi J., Heiman D., Young S., Grabherr M., Johnson J., Lander E.S., Lindblad-Toh K.
    Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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