Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.


StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 24,435
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001593
Taxonomy45351 - Nematostella vectensis
StrainCH2 X CH6
Last modifiedFebruary 26, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000209225.1 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:89.7%[S:87.9%,D:1.8%],F:4.8%,M:5.5%,n:954 metazoa_odb10

Nematostella vectensis is a tiny, worm-like anemone belonging to the oldest eumetazoan phylum, the Cnidaria. It grows up to 40mm long with up to 16 long tentacles. It is native to salt marshes along the coasts of the Atlantic and Pacific oceans. It is a good indicator of pollution due to its sensitivity to hypoxia.

The Nematostella vectensis genome has a diploid chromosome number of 30 with a total genome size of approximately 450Mb. The genome contains around 18,000 predicted protein-coding genes, comparable to other animals. Over 25% of the genome comprises repetitive elements, including DNA transposons, long terminal repeat and non-long terminal repeat retrotransposons.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence24435
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again