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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,962
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001592
Taxonomy382640 - Bartonella tribocorum (strain CIP 105476 / IBS 506)
StrainCIP 105476 / IBS 506
Last modifiedJuly 24, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000196435.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Bartonella sp. JB15 pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:98%[S:98%,D:0%],F:0.2%,M:1.9%,n:639 rhizobiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Outlier (high value)

Bartonella sp. are alphaproteobacteria known to be involved in mammalian diseases of varying gravity, including cat scratch fever, endocarditis and bartonellosis. They are transmitted by insect vectors and survive in mammalian reservoir hosts. A variety of Bartonella have been isolated from different mammalian hosts in both Europe and the Americas. They grow facultatively within erythrocytes and vascular epithelial cells.

B.tribocorum strain was isolated from a wild rat (R.norvegicus) near the Rhine River in France. It has not yet been observed to be a human pathogen. It is aerobic, has no flagella, but seems to have polar fimbriae, and is catalase, oxidase and urease negative. Comparative analyses of the 4 available (December 2007; B.tribocorum, B.henselae, B.quintana and B.bacilliformis) Bartonella genomes indicates that the presence of 2 type IV secretion systems (virB and trw) which have been acquired by lateral gene transfer since B.tribocorum, B.henselae, and B.quintana separated from B.bacilliformis. As B.bacilliformis is very virulent it is suggested that these type IV secretion system may be involved in virulence attenuation and increased host range (modified from PubMed 9828434 and 18037886).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1944
Plasmid pBT0118

Publications

  1. "Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors."
    Saenz H.L., Engel P., Stoeckli M.C., Lanz C., Raddatz G., Vayssier-Taussat M., Birtles R., Schuster S.C., Dehio C.
    Nat. Genet. 39:1469-1476(2007) [PubMed] [Europe PMC] [Abstract]
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