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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 8,315
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001529
Taxonomy508771 - Toxoplasma gondii (strain ATCC 50611 / Me49)
StrainATCC 50611 / Me49
Last modifiedJuly 24, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000006565.2 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:100%[S:100%,D:0%],F:0%,M:0%,n:502 coccidia_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Partially assembled WGS sequence153
Chromosome IX838
Chromosome Ib246
Chromosome XII949
Chromosome XI879
Chromosome VI491
Chromosome II284
Chromosome VIIa564
Chromosome IV339
Chromosome X972
Chromosome Ia242
Chromosome VIIb694
Chromosome VIII945
Chromosome III315
Chromosome V408

Publications

  1. Sibley D., Venepally P., Karamycheva S., Hadjithomas M., Khan A., Brunk B., Roos D., Caler E., Lorenzi H.
    Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
  2. "Annotation of Toxoplasma gondii ME49."
    Lorenzi H., Caler E., Galinsky K., Schobel S., Brunk B.P., Roos D.S., Paulsen I.
    Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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