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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,919
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001505
Taxonomy716544 - Waddlia chondrophila (strain ATCC VR-1470 / WSU 86-1044)
StrainATCC VR-1470 / WSU 86-1044
Last modifiedDecember 2, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000092785.1 from ENA/EMBL full
BuscoC:89.9%[S:89.2%,D:0.7%],F:2%,M:8.1%,n:148
CompletenessStandard

This obligatory intracellular bacteria is suspected to be an agent of miscarriage in humans and ruminants. Strain WSU 86-1044 was isolated in 1986 at the Washington Animal Disease Diagnostic Laboratory (hence the genus name) from tissues of a first-trimester aborted bovine foetus; it grows in macrophages as well as in Acanthamoeba castellanii. Unlike other Chlamydia sequenced to date 5% of the genome encodes repetitive sequences; other Chlamydia have almost no repetitive DNA. It encodes a number of virulence factors specific for resistance to host or environmental stresses including a putative carbonate permease, heavy metal exporters and multidrug efflux pumps. It is less metabolically dependent on its host than other Chlamydiae, as it encodes the capacity to synthesize some nucleotides, amino acids, lipids and other cofactors (adapted from PMID 20531937).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1899
Plasmid pWc22
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Main funding by: National Institutes of Health

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