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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,545
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001477
Taxonomy515619 - Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990)
StrainATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000020605.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990) (Eubacterium rectale) pan proteome (fasta)
BuscoC:98%[S:97.2%,D:0.8%],F:1.2%,M:0.8%,n:254
CompletenessClose to Standard

The human distal gut microbiota contain more bacterial cells than all of our body's other microbial communities combined. More than 90% of phylogenetic types belong to two divisions, the Bacteroidetes and the Firmicutes, with the remaining types distributed among eight other divisions. In the human colon, Clostridium cluster XIVa is 1 of 2 abundantly represented clusters of Firmicutes.

Eubacterium spp., members of Clostridium closter XIVa, are a group of anaerobic Gram-positive nonspore-forming rods; strain ATCC 33656 is a human-gut derived bacterium. Germ-free mice were colonized with E.rectale or Bacteroides thetaiotaomicron, and then the response of the system as a whole to further colonization by the other bacterium were performed. These showed niche specialization and the importance of host glycans as nutrients to stabilize the ecosystem (adapted from PubMed 19321416).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome3545
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Main funding by: National Institutes of Health

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