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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 5,457
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001450
Taxonomy36329 - Plasmodium falciparum (isolate 3D7)
StrainIsolate 3D7
Last modifiedJanuary 17, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000002765.3 from ENA/EMBL full
BuscoC:26.1%[S:25.6%,D:0.4%],F:0.4%,M:73.5%,n:234
CompletenessStandard

Plasmodium falciparum is the malarial parasite most dangerous to humans, accounting for over 90% of all malarial deaths. It is transmitted by the female Anopheles mosquito. It was the first species of the genus Plasmodium to be sequenced at The Sanger Center, as part of the ongoing malaria genome sequencing project. Its genome is notable for an exceptionally low GC content of under 20%. In other respects, the genome has a similar size (23.3 Mb) and gene count (about 5300) to other species of malarial parasites.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 1133
Chromosome 3240
Chromosome 4235
Chromosome 5313
Chromosome 6318
Chromosome 7294
Chromosome 8319
Chromosome 9383
Chromosome 13700
Mitochondrion3
Apicoplast A7
Apicoplast B23
Chromosome 2229
Chromosome 10415
Chromosome 11489
Chromosome 12544
Chromosome: api10
Chromosome 14800
Chromosome: mit2

Publications

  1. "Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13."
    Hall N., Pain A., Berriman M., Churcher C.M., Harris B., Harris D., Mungall K.L., Bowman S., Atkin R., Baker S., Barron A., Brooks K., Buckee C.O., Burrows C., Cherevach I., Chillingworth C., Chillingworth T., Christodoulou Z.
    Barrell B.G.
    Nature 419:527-531(2002) [PubMed] [Europe PMC] [Abstract]
  2. Pathogen Informatics

    Submitted (JUN-2019) to the EMBL/GenBank/DDBJ databases
  3. "Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum."
    Wilson R.J.M., Denny P.W., Preiser P.R., Rangachari K., Roberts K., Roy A., Whyte A., Strath M., Moore D.J., Moore P.W., Williamson D.H.
    J. Mol. Biol. 261:155-172(1996) [PubMed] [Europe PMC] [Abstract]
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