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StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 3,211
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001441
Taxonomy572477 - Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
StrainATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D
Last modifiedFebruary 26, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000025485.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) (Chromatium vinosum) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:99.4%[S:99.2%,D:0.2%],F:0.3%,M:0.3%,n:652 chromatiales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

An environmentally abundant anoxygenic purple sulfur bacterium occurring not only in pelagic communities but also in littoral sediments like sandy beaches, salt marches and intertidal mud flats; this strain was isolated from ditch water. It is anoxygenically photosynthetic, and depends on reduced inorganic sulfur compounds originating from anaerobic degradation of organic carbon and concomitant sulfide production by sulfate- and sulfur-reducing bacteria. The reducing equivalents in sulfide therefore ultimately stem from carbon already fixed by oxygenic photosynthesis and capture of light energy by anoxygenic photosynthesis compensates for the loss of organic carbon in the anaerobic food chain. A. vinosum store sulfur globules inside of the cells when oxidizing sulfide or thiosulfate. They have this trait in common with a large number of environmentally important chemotrophic sulfur oxidizers like Beggiatoa and with sulfur-oxdizing bacterial symbionts of marine animals like Riftia pachyptila. On a biochemical level, oxidative sulfur metabolism of A. vinosum is among the best studied of all bacteria and the organism therefore already serves as a model for sulfur-storing bacteria. Purple sulfur bacteria fix carbon along the Calvin cycle. Dense accumulations of phototropic sulfur bacteria can feed organic carbon (which would otherwise be lost) into the carbon cycle of toxic water or sediment layers. The role of purple sulfur bacteria in these globally important processes has so far been largely underestimated and not been well studied (adapted from

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Plasmid pALVIN01119
Plasmid pALVIN0248
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Main funding by: National Institutes of Health

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