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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 2,512
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001422
Taxonomy84588 - Synechococcus sp. (strain WH8102)
StrainWH8102
Last modifiedJuly 6, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000195975.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Synechococcus sp. (strain CC9902) pan proteome (fasta)

Synechococcus sp. (strain WH8102) is a marine cyanobacterium, isolated from the Sargasso Sea in March 1981. As an organism living in open seawater it has extensive capabilities to take up phosphate and urea. It has been shown to be able to take up amino acids, oligopeptides and phosphonates and encodes transporters for many other compounds and trace elements. Its motility apparatus is unusual, in that none of the motor or flagellar proteins associated with other types of prokaryotic motility have been found except for six ORFs associated with type IV-pilus-dependent motility. This form of motility is found in some other cyanobacteria, and requires among other regions the swmB protein, which encodes for a nearly 11,000 amino acid protein. The cell envelope is unusual and probably includes glycosylated and sialated proteins as these enzymes have been found in its genome. Its evolutionary past seems to have been highly influenced by horizontal gene transfer, although it no longer seems to have any active prophages or plasmids.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2512
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