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Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,160 sequences in UniParc
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001421
Taxonomy257311 - Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Strain12822 / ATCC BAA-587 / NCTC 13253
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000195695.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) pan proteome (fasta)
CompletenessClose to Standard

The genus Bordetella contains nine designated species, three of which are so closely related that they are considered subspecies and are referred to as the "classical Bordetella"; B. pertussis, B. parapertussis and B. bronchiseptica. Although highly similar at the DNA sequence level, these 3 vary in host specificity, severity of diseases, and their ability to cause acute versus chronic infection. B. bronchiseptica causes infections ranging from lethal pneumonia to asymptomatic respiratory carriage and chronically colonizes the respiratory tracts of various mammalian hosts, with some lineages primarily isolated from humans. B. pertussis and B. parapertussis(hu), which are thought to have evolved independently from a B. bronchiseptica-like progenitor, are causative agents of whooping cough in humans. Another distinct lineage only isolated from sheep has been designated B. parapertussis(ov). Comparison of seven divergent classical Bordetella isolates shows only approximately 50% of genes are shared by all strains in the core genome consisting of 2,857 gene families. The pan-genome consists of at least 5,558 gene families; analysis suggests that the classical Bordetellae pan-genome is "open" with limited gene acquisition, although some evidence of horizontal gene transfer is seen.

Bordetella parapertussis infects both sheep and humans. In human infants it causes whooping cough.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationUniParc sequence(s)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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