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Overview

StatusReference proteome
Proteinsi12,351
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001396
Taxonomy670386 - Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)
StrainATCC 26659 / Pp 5 / PN500
Last modifiedNovember 9, 2018
Genome assembly and annotationi GCA_000004825.1 from ENA/EMBL

Polysphondylium pallidum is a slime mold which lives in soil, dung, leaf litter and other decaying organic materials and feeds on bacteria and fungal spores. In favorable damp conditions, it may reproduce sexually while in drier conditions asexual reproduction is more likely.

The genome sequence was published in 2011 along with that of a second slime mold, Dictyostelium fasciculatum. The P. pallidum genome is around 30 Mb in size and displays conventional telomere organization and strongly reduced numbers of transposable elements when compared to the genome of the most studied slime mold, Dictyostelium discoideum.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Unassembled WGS sequence12340
Plasmid PPN50011

Publications

  1. "Living fossils from the dawn of multicellularity."
    Gloeckner G., Schaap P., Noegel A.A., Felder M., Eichinger L., Heidel A.J., Platzer M.
    Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
  2. "Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication."
    Heidel A.J., Lawal H.M., Felder M., Schilde C., Helps N.R., Tunggal B., Rivero F., John U., Schleicher M., Eichinger L., Platzer M., Noegel A.A., Schaap P., Gloeckner G.
    Genome Res. 2011:1882-1891(2011) [PubMed] [Europe PMC] [Abstract]
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