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Overview

StatusReference proteome
Proteinsi3,178
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001361
Taxonomy883 - Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
StrainMiyazaki F / DSM 19637
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000021385.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) pan proteome (fasta)

Desulfovibrio vulgaris is a sulfate reducer commonly found in a variety of soil and aquatic environments. It respires by electron transfer using the heme group in c-type cytochromes, and can corrode metal by cathodic depolarization using the same process. Its preferred carbon substrates are lactate and pyruvate. Sulfate-reducing bacteria have an important economic impact because they are involved in biocorrosion of ferrous metals in anaerobic environment. For example, metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars of losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products.

Desulfovibrio vulgaris Miyazaki F strain has been the sulfate-reducing strain of choice for examination of electron transfer components in Japan since the late 1960s. Enzymes of sulfate reduction, cytochromes and hydrogenases have been purified and characterized from D.vulgaris Miyazaki and have been the basis for comparison for similar work with D.vulgaris Hildenborough (DESVH). These strains are similar in physiology and many results are automatically considered applicable to all D.vulgaris strains. However, little is known about the genetics and true similarity of the Miyazaki strain to D. vulgaris. Thus the genome sequence of Miyazaki may reveal differences in the redundancy of systems for energy generation from that seen for Hildenborough and allow for more definitive experiments to establish electron flow.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3178

Publications

  1. "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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