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Proteomes - Finegoldia magna (strain ATCC 29328 / DSM 20472 / WAL 2508) (Peptostreptococcus magnus)

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,813
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001319
Taxonomy334413 - Finegoldia magna (strain ATCC 29328 / DSM 20472 / WAL 2508)
StrainATCC 29328 / DSM 20472 / WAL 2508
Last modifiedOctober 17, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000010185.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Finegoldia magna (strain ATCC 29328 / DSM 20472 / WAL 2508) (Peptostreptococcus magnus) pan proteome (fasta)
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:97.9%[S:97.5%,D:0.5%],F:0.5%,M:1.6%,n:433 tissierellales_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Finegoldia magna (strain ATCC 29328), formerly known as Peptostreptococcus magnus, is a Gram-positive anaerobic coccus. It is a commensal bacterium that colonizes human skin and mucous membranes but it has also been recognized as an opportunistic pathogen responsible for various infectious diseases. It is isolated most frequently from various infection sites, including soft tissue, bone and joint, and diabetic foot infections.

The genome of Finegoldia magna (strain ATCC 29328) is made up of a circular chromosome and a plasmid with a GC content of 32.3 and 29.7%, respectively.

It does not possess a complete TCA cycle as only the step from pyruvate to fumarate is present. It has a complete gene set for the biosynthesis of five amino acids (glycine, serine, threonine, aspartate and asparagine). Many amino acid/oligopeptide transporters have been identified. Forty-nine ABC transporters have been found. Three homologs of albumin-binding protein, a virulence factor useful for antiphagocytosis, are encoded on the chromosome and one is encoded on the plasmid.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome
AP008971
1631
Plasmid pFMC
AP008972
182

Publications

  1. "Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen."
    Goto T., Yamashita A., Hirakawa H., Matsutani M., Todo K., Ohshima K., Toh H., Miyamoto K., Kuhara S., Hattori M., Shimizu T., Akimoto S.
    DNA Res. 15:39-47(2008) [PubMed] [Europe PMC] [Abstract]
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