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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 206
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001303
Taxonomy871271 - Zinderia insecticola (strain CARI)
StrainCARI
Last modifiedNovember 23, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000147015.1 from ENA/EMBL full
BuscoC:12.9%[S:12.9%,D:0%],F:2.9%,M:84.2%,n:582
CompletenessOutlier

Zinderia insecticola, a Betaproteobacteria, is a co-endosymbiont with Sulcia muelleri in the spittlebug Clastoptera arizonana. Plant sap feeding insects such as C.arizonana depend on their obligate endosymbionts to furnish them with essential amino acids and/or vitamin cofactors. The symbionts are vertically transmitted via eggs, and are found in a specialized host organ called a bacteriome. Genome sequence strongly suggests that Zinderia uses an alternative genetic code, in which UGA codes for tryptophan instead of stop. The GC content of Zinderia is 13.5%, the lowest yet observed in any cellular genome. It does not code for genes involved in making a cell membrane, peptidoglycan, nucleotides, or vitamin cofactors, however Zinderia is able to synthesize tryptophan, methionine, and histidine, although shikimate, probably provided by Sulcia is needed as a precursor in the production of tryptophan. Thus in this endosymbiotic pair it is Sulcia muelleri that synthesizes leucine, isoleucine, valine, threonine, lysine, arginine and phenylalanine, while Zinderia synthesizes tryptophan, histidine and methionine (adapted from PMID 20829280).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome206

Publications

  1. "Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution."
    McCutcheon J.P., Moran N.A.
    Genome Biol. Evol. 2:708-718(2010) [PubMed] [Europe PMC] [Abstract]
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