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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 2,687
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001302
Taxonomy314260 - Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)
StrainATCC BAA-594 / HTCC2503 / KCTC 12087
Last modifiedNovember 5, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000152825.2 from ENA/EMBL full
BuscoC:97.3%[S:96.8%,D:0.5%],F:0.9%,M:1.8%,n:221
CompletenessStandard

Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) is an obligately aerobic, NaCl-requiring, chemoheterotrophic Gram-negative bacterium isolated from the Bermuda Atlantic Time Series Station in the western Sargasso Sea, Atlantic Ocean. The cells are weakly motile short rods (sometimes coccoid), 0.4-1.3 um in diameter and 0.6-1.8 um in length, that divided by binary fission. It has a short flagellum with a mean length of 2.4 um and a hook is clearly visible at one end of flagella detached from cells. The colonies on marine agar are very small (0.3-0.8 mm in diameter), yellowish-brown and very hard . The temperature range for growth is 10-37 degrees Celsius, with optimum growth at 30 degrees Celsius. No growth is observed at 4 or 44 degrees Celsius. Extended incubation of up to 40 days is required at 10 degrees before growth is observed. The pH range for growth is 6.0-9.0, with optimum growth at pH 8.0. No growth is detected at pH 5.5 or 9.5. P. bermudensis is moderately halophilic and shows good growth at NaCl concentrations of 0.75-25% (w/v) and optimal growth at 3.0% (w/v). It produced carotenoid pigments with spectral absorbance peaks at 321 and 465 nm, but no bacteriochlorophyll a. P. bermudensis reduces nitrate to nitrite, but not nitrite to N2, and utilizes some pentoses, hexoses, sugar alcohols, oligosaccharides and amino acids as sole carbon sources, but C1-C4 compounds and organic acids are not utilized as sole carbon sources. It is susceptible to chloramphenicol, carbenicillin, tetracycline, streptomycin, puromycin, erythromycin and rifampicin. However, it is resistant to nalidixic acid, kanamycin, vancomycin, ampicillin, benzylpenicillin, gentamicin and cycloheximide. (Adapted from PMID: 12892122).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2687

Publications

  1. "Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order "Parvularculales" in the class Alphaproteobacteria."
    Oh H.M., Kang I., Vergin K.L., Kang D., Rhee K.H., Giovannoni S.J., Cho J.C.
    J. Bact. 193:305-306(2011) [PubMed] [Europe PMC] [Abstract]
  2. "Genome sequence of Parvularcula bermudensis HTCC2503."
    Kang D.-M., Oh H.-M., Cho J.-C.
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
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