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StatusReference proteome
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001225
Taxonomy340100 - Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
StrainATCC BAA-461 / DSM 12804 / CCUG 43448
Last modifiedOctober 14, 2018
Genome assembly and annotationi GCA_000067205.1 from ENA/EMBL

The genus Bordetella comprises one environmental isolate and several human and animal pathogens. Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448), the only facultatively anerobic Bordetella, was isolated from an anaerobic, dechlorinating bioreactor culture enriched from river sediment in Germany. It was isolated from the dechlorinating mixed culture due to its ability to anaerobically reduce selenate to elemental selenium. B.petrii strains have also been isolated from cystic fibrosis patients, from patients with degenerative bone disease as well as from marine sponges and a grass root consortium. Compared to other Bordetellae, B.petrii DSM 12804 has many mobile genetic elements (22% of its genome) including 7 laterally acquired genomic islands. All of these genomic island are still mobile within the DSM 12804 population. It has the ability to degrade a remarkable variety of aromatic compounds, which explains the large variety of niches from which it has been isolated. It encodes various virulence factors, but lacks all known toxins found in pathogenic Bordetella (adapted from PubMed 18826580).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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