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Overview

StatusReference proteome
Proteinsi7,461
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001192
Taxonomy391038 - Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)
StrainDSM 17167 / CIP 108236 / LMG 21445 / STM815
Last modifiedNovember 9, 2018
Genome assembly and annotationi GCA_000020045.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) (Burkholderia phymatum) pan proteome (fasta)

It has only recently been discovered that in addition to alphaproteobacteria some betaproteobacteria are also able to nodulate legumes and fix atmospheric nitrogen. Burkholderia phymatum STM815 was isolated from a root nodule of Machaerium lunatum in French Guiana. Although it was isolated from M.lunatum it nodulates Mimosa spp., much more effectively, and has a broader host range than another known Mimosa symbiont Cupriavidus taiwanensis LMG19424 (CUPTR). Additionally B.phymatum strain STM815 is diazotrophic in culture, and thus is the first betaproteobacteria confirmed to fix nitrogen when free-living.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 13071
Chromosome 22341
Plasmid pBPHY011626
Plasmid pBPHY02435

Publications

  1. "Complete genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species."
    Moulin L., Klonowska A., Caroline B., Booth K., Vriezen J.A., Melkonian R., James E.K., Young J.P., Bena G., Hauser L., Land M., Kyrpides N., Bruce D., Chain P., Copeland A., Pitluck S., Woyke T., Lizotte-Waniewski M., Bristow J., Riley M.
    Stand. Genomic Sci. 2014:763-774(2014) [PubMed] [Europe PMC] [Abstract]
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