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Overview

Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 4,416
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001113
Taxonomy400668 - Marinomonas sp. (strain MWYL1)
StrainMWYL1
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000017285.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Marinomonas sp. (strain MWYL1) pan proteome (fasta)
BuscoC:100%[S:99.8%,D:0.2%],F:0%,M:0%,n:619
CompletenessStandard

Marinomonas MWYL1 was isolated from the root surface of the salt marsh grass Spartina anglica, growing near the North Norfolk (England) village of Stiffkey. The genus Marinomonas comprises a widespread group of gamma-proteobacteria that exist in coastal waters, and which had been earlier been included in the genus Alteromonas. Some Marinomonas strains are pigmented strains due to melanin and some produce metabolites that may be of biotechnological value . However, the interest in Marinomonas MWYL1 was that it could grow on the betaine molecule Dimethylsulphoniopropionate (DMSP) as sole carbon source and, when it did do, it released large amounts of the gas dimethyl sulphide. DMSP is a compatible solute that is used by many marine phytoplankton and seaweed macroalgae as an osmoticum and an anti-stress compound . In addition, a few known land angiosperms make DMSP and these include certain species of Spartina - hence the choice of these plants as a source for DMSP-degrading bacteria. The catabolism of DMSP is of major importance, for several reasons. First, it represents a colossal biotransformation of marine sulfur and carbon. Secondly, the process can lead to the production of DMS, much of is released into the atmosphere, where it can be oxidised to form products that act as cloud condensation nuclei. These are responsible for forming much of the cloud cover over the oceans, on such a scale that the light incidence on the Earth and hence the climate is significantly affected . The DMS-dependent synthesis of the climate-changing gas DMS is likely determined by genes that are subject to horizontal gene transfer.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome4416
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Main funding by: National Institutes of Health

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