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Overview

StatusReference proteome
Proteinsi1,490
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001106
Taxonomy419665 - Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
StrainATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3
Last modifiedOctober 22, 2018
Genome assembly and annotationi GCA_000017185.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3) pan proteome (fasta)

Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) is an anaerobic archaeon of the phylum Euryarchaeota. It was isolated from deep marine sediment from the Nankai Trough off the coast of Japan. This organism is a methanogen, able to use hydrogen or formate to reduce CO2. Strain Nankai-3 is the type strain and will be used for comparative analysis.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome1490

Publications

  1. "Complete sequence of Methanococcus aeolicus Nankai-3."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A.
    Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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