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Proteomes - Myotis lucifugus (Little brown bat)

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 20,651
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001074
Taxonomy59463 - Myotis lucifugus
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000147115.1 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:88.7%[S:83.5%,D:5.2%],F:2.8%,M:8.5%,n:12234 laurasiatheria_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Close to standard (low value)

Myotis lucifugus (the little brown bat) is an insectivorous microbat found throughout most of North America. This species, like many other microbat species, has a highly developed echolocating neurosensory system.

During winter it migrates to hibernacula. It can delay fertilization, implantation, or embryogenesis, and experiences drastic metabolic changes during both daily torpor and prolonged hibernation.

The little brown bat has a very long lifespan for its size and metabolic rate, living an average of 7 years and as long as 30 years. It is used as a model organism for topics including echolocation, social behavior and longevity.

The reference proteome of is derived from the genome sequence prepared by the Broad Institute as part of the Mammalian Genome Project in 2010. The size of the genome is 1.9 Gb.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence
AAPE02000000
20651
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Main funding by: National Institutes of Health

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