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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 40,414
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001073
Taxonomy61853 - Nomascus leucogenys
Last modifiedDecember 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000146795.3 from Ensembl full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.</p> C:92.3%[S:57.2%,D:35.1%],F:2.2%,M:5.5%,n:13780 primates_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Gibbons are known as the lesser apes as they are smaller than the great apes with less difference in size between the sexes.They have a number of features resembling monkeys but are tailless hence, they are still classified as apes. Gibbons are in the family Hylobatidae which is split into 4 genera: Genus Hylobates (dwarf gibbons), Genus Hoolock, Genus Symphalangus, and Genus Nomascus (crested gibbons). Nomascus leucogenys, the white-cheeked gibbon is found in South East Asia.Males have black hair except for white patches on their cheeks; females are reddish tan with a dark brown crest from the top of the head to the top of the neck. The average weight is 7.5kg with long strong arms and a unique ball and socket jointed wrist which makes them extremely agile and fast moving through trees. They feed mainly on fruits, leaves and flowers with the addition of insects and small mammals. They are intelligent and social with complex visual and vocal displays particularly when attracting mates and defending their territory. Lifespan is estimated to be 30 years or more.

The current Ensembl genome assembly uses the sequences from genome Nleu1.0. This contains 2.8Gb with 18,575 protein-coding genes and 28,352 gene transcripts.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome 1a1633
Chromosome 51312
Chromosome 191547
Chromosome 181497
Chromosome 61588
Chromosome 141571
Chromosome 82029
Chromosome 42353
Chromosome 21898
Chromosome 91283
Chromosome 25399
Chromosome 131705
Chromosome 171882
Chromosome 24698
Chromosome 31623
Chromosome 122139
Chromosome 20709
Chromosome 7b1469
Chromosome 151607
Chromosome X1464
Chromosome 102502
Chromosome 23585
Chromosome 111549
Chromosome 22a2065
Chromosome 22347
Chromosome 16899
Unplaced
1064
Mitochondrion13

Publications

  1. "Phylogenetic relationships and divergence dates of the whole mitochondrial genome sequences among three gibbon genera."
    Matsudaira K., Ishida T.
    Mol. Phylogenet. Evol. 55:454-459(2010) [PubMed] [Europe PMC] [Abstract]
  2. Gibbon Genome Sequencing Consortium
    Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases
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Main funding by: National Institutes of Health

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