Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 14,754
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001070
Taxonomy7222 - Drosophila grimshawi
StrainTucson 15287-2541.00
Last modifiedMarch 21, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000005155.1 from ENA/EMBL full
BuscoC:98.2%[S:96%,D:2.2%],F:0.5%,M:1.3%,n:3285
CompletenessStandard

The picture-winged species Drosophila grimshawi is found on the islands of Hawaii. Unlike most Hawaiian Drosophilain which occur on only one island, this species has a wide geographic range populating a number of islands of the Hawaiian archipelago.

D. grimshawi is one of 12 fruitfly genomes sequenced for a large comparative study by the Drosophila 12 Genomes Consortium. Its genome is 231Mb in size and contains 15,270 protein-coding genes (81.3% of which have homologues in D. melanogaster). Out of the 12 species D. grimshawi has the lowest transposable/ repeat content probably because it is an island endemic so the chances for horizontal transfers are reduced.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Mitochondrion13
Unassembled WGS sequence14741

Publications

  1. "Comparative genomics of Drosophila mtDNA: Novel features of conservation and change across functional domains and lineages."
    Montooth K.L., Abt D.N., Hofmann J.W., Rand D.M.
    J. Mol. Evol. 69:94-114(2009) [PubMed] [Europe PMC] [Abstract]
  2. "Evolution of genes and genomes on the Drosophila phylogeny."
    Drosophila 12 genomes consortium
    Nature 450:203-218(2007) [PubMed] [Europe PMC] [Abstract]
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again