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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 11,038
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001056
Taxonomy306901 - Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
StrainATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970
Last modifiedMay 25, 2021
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000143365.1 from ENA/EMBL full
Buscoi <p>The Benchmarking Universal Single-Copy Ortholog (BUSCO) assessment tool is used, for eukaryotic and bacterial proteomes, to provide quantitative measures of UniProt proteome data completeness in terms of expected gene content. BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (M) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment, and the name of the taxonomic lineage dataset used.</p> C:85.8%[S:85.6%,D:0.2%],F:7%,M:7.2%,n:3817 sordariomycetes_odb10
Completenessi <p>Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Possible values are 'Standard', 'Close to Standard' and 'Outlier'.</p> Standard

Chaetomium globosum (Chaetomiaceae) is the type species of the genus Chaetomium and is an important indoor contaminant which can grow in warm, humid areas of the home. It is associated with a number of health risks due to the mould producing mycotoxins which can act as an allergen and cause respiratory inflammation. In very rare cases high level exposure to mycotoxins can cause cerebral and systematic infections leading to mortality in immunocompromised patients. The fungus is also the common cause of human skin and nail infections in humans.

The 7x genome assembly of Chaetomium globosum (approximately 36 Mb in size) was made public in 2004 by The Chaetomium globosum sequence project.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence11038

Publications

  1. "Draft genome sequence of the cellulolytic fungus Chaetomium globosum."
    Cuomo C.A., Untereiner W.A., Ma L.-J., Grabherr M., Birren B.W.
    Genome Announc. 3:E0002115-E0002115(2015) [PubMed] [Europe PMC] [Abstract]
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