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StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 15,998
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001055
Taxonomy321614 - Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
StrainSN15 / ATCC MYA-4574 / FGSC 10173
Last modifiedJanuary 15, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="">more...</a>)</p> GCA_000146915.2 from ENA/EMBL full
CompletenessClose to Standard

Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173), the glume blotch fungus, is a major wheat pathogen, causing severe crop loss. The macroscopic symptoms of infection are lens-shaped lesions in which brown pycnidia develop in appropriate conditions. Lesions often form in stem nodes, hence the species name "nodorum". The most damaging aspect of the disease is infection of the wheat head. Availability of the genome sequence will enhance understanding of the functions of the genes controlling pathogenicity with a view to developing novel control methods.

The genome sequence analysis was published in 2007 and showed that the fungus contains a minimum of 10,762 nuclear genes with an additional 5,000 genes which are predicted but have no EST support. Despite the lack of evidence, these have been retained in the genome for further possible validation and analysis. The sequenced strain, SN15 / ATCC MYA-4574 / FGSC 10173, was collected in western Australia.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Unassembled WGS sequence15979


  1. "Dothideomycete-plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum."
    Hane J.K., Lowe R.G.T., Solomon P.S., Tan K.-C., Schoch C.L., Spatafora J.W., Crous P.W., Kodira C.D., Birren B.W., Galagan J.E., Torriani S.F.F., McDonald B.A., Oliver R.P.
    Plant Cell 19:3347-3368(2007) [PubMed] [Europe PMC] [Abstract]
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