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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 2,137
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001031
Taxonomy349741 - Akkermansia muciniphila (strain ATCC BAA-835 / Muc)
StrainATCC BAA-835 / Muc
Last modifiedMay 3, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000020225.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Akkermansia muciniphila (strain ATCC BAA-835 / Muc) pan proteome (fasta)
BuscoC:92.8%[S:91.9%,D:0.8%],F:0%,M:7.2%,n:471
CompletenessStandard

Akkermansia muciniphila strain ATCC BAA-835 (the type strain) was isolated as a novel, strictly anaerobic, mucin-degrading bacterium from a healthy human fecal sample in anaerobic medium containing gastric mucin as the sole carbon and nitrogen source. Cells are oval-shaped, showing a different size depending on the medium, in mucin medium being 640 nm in diameter and 690 nm in length and rich medium being 830 nm in diameter and 1 um in length. Cells stained Gram-negative, while flagella were not seen on negatively stained electron micrograph preparations. Formation of spores by the strain was never observed. In mucin medium, the organism produced a capsule and could grow as single cells or in pairs, rarely in chains and often formed aggregates. It counts for 1-3% of cells in the human feces and is a normal component of the intestinal tract.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome2137

Publications

  1. "The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes."
    van Passel M.W., Kant R., Zoetendal E.G., Plugge C.M., Derrien M., Malfatti S.A., Chain P.S., Woyke T., Palva A., de Vos W.M., Smidt H.
    PLoS ONE 6:E16876-E16876(2011) [PubMed] [Europe PMC] [Abstract]
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