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Overview

StatusReference proteome
Proteinsi4,269
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000001023
Taxonomy246200 - Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
StrainATCC 700808 / DSM 15171 / DSS-3
Last modifiedNovember 9, 2018
Genome assembly and annotationi GCA_000011965.2 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) pan proteome (fasta)

Ruegeria pomeroyi (formerly Silicibacter pomeroyi) is a member of the marine Roseobacter clade whose relatives comprise 10-20% of coastal and oceanic mixed-layer bacterioplankton. It relies on a lithoheterotrophic strategy that uses inorganic compounds to supplement heterotrophy and it harbors genes advantageous for associations with plankton and suspended particles. Ruegeria pomeroyi has a physiology distinct from that of marine oligotrophs.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome3828
Plasmid megaplasmid Spo442
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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