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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome%5Fredundancy">more...</a>)</p> 1,353
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a>. It consists of the characters 'UP' followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000960
Taxonomy521095 - Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)
StrainATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546
Last modifiedJanuary 9, 2020
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000024225.1 from ENA/EMBL full
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus) pan proteome (fasta)
BuscoC:54.8%[S:54.8%,D:0%],F:10.5%,M:34.7%,n:352
CompletenessStandard

Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) is a non-motile and obligate anaerobic Gram-positive bacterium. A.parvulum is of high interest because it is frequently isolated from the human oral cavity, especially from the tongue dorsum, where it is associated with patients suffering from halitosis (oral malodor). It is not found to be significantly associated with chronic periodontitis, though a participation in periodontitis can not be fully excluded. Nevertheless, it is associated with odontogenic infections, e.g. dental implants, but also with the saliva of healthy subjects. A. parvulum is susceptible to chloramphenicol, clindamycin, erythromycin, penicillin G, and tetracycline. It produces acid (final pH < 4.7) from cellobiose, esculin, fructose, galactose, glucose, inulin, lactose, maltose, mannose, salicin, sucrose, and trehalose; erythritol and xylose are weakly fermented. (Adapted from PMID 21304653). An erratum has been published, PMID 21304720.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Component representationProteins
Chromosome1353
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