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Overview

StatusReference proteome
Proteinsi2,906
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000000948
Taxonomy634452 - Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153)
StrainNBRC 3283 / LMG 1513 / CCTM 1153
Last modifiedFebruary 27, 2018
Genome assembly and annotationi GCA_000010825.1 from ENA/EMBL
Pan proteomei <p>A pan proteome is the full set of proteins thought to be expressed by a group of highly related organisms (e.g. multiple strains of the same bacterial species).<p><a href='/help/pan_proteomes' target='_top'>More...</a></p> This proteome is part of the Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) pan proteome (fasta)

Acetobacter pasteurianus is an acetic acid bacterium traditionally used in the production of fermented food; strain NBRC 3283 (formerly known as IFO 3283) is used in vinegar production in Japan. Acetic acid bacteria are subject to physiological and genetic instability. In order to explore this instability 8 subisolates of NBRC were completely sequenced; only one isolate is represented here (strain IFO 3283-01).

Over 280 genes, corresponding to 9% of the genome, were found to encode transposases in this isolate, with 3 single nucleotide polymorphisms and 5 transposon insertions in 32 different isolates from a multi-phenotype cell complex, indicating the propensity for genetic instability (adapted from PubMed 19638423).

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome2556
Plasmid pAPA01-011165
Plasmid pAPA01-020164
Plasmid pAPA01-03059
Plasmid pAPA01-0403
Plasmid pAPA01-0502
Plasmid pAPA01-0602

Publications

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